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Calibrating Neural Simulation-Based Inference with Differentiable Coverage Probability

Neural Information Processing Systems

Bayesian inference allows expressing the uncertainty of posterior belief under a probabilistic model given prior information and the likelihood of the evidence. Predominantly, the likelihood function is only implicitly established by a simulator posing the need for simulation-based inference (SBI).


OneFlowSBI: One Model, Many Queries for Simulation-Based Inference

Nautiyal, Mayank, Ju, Li, Ernfors, Melker, Hagland, Klara, Holma, Ville, Söderholm, Maximilian Werkö, Hellander, Andreas, Singh, Prashant

arXiv.org Machine Learning

We introduce \textit{OneFlowSBI}, a unified framework for simulation-based inference that learns a single flow-matching generative model over the joint distribution of parameters and observations. Leveraging a query-aware masking distribution during training, the same model supports multiple inference tasks, including posterior sampling, likelihood estimation, and arbitrary conditional distributions, without task-specific retraining. We evaluate \textit{OneFlowSBI} on ten benchmark inference problems and two high-dimensional real-world inverse problems across multiple simulation budgets. \textit{OneFlowSBI} is shown to deliver competitive performance against state-of-the-art generalized inference solvers and specialized posterior estimators, while enabling efficient sampling with few ODE integration steps and remaining robust under noisy and partially observed data.


Fast and Robust Simulation-Based Inference With Optimization Monte Carlo

Gkolemis, Vasilis, Diou, Christos, Gutmann, Michael

arXiv.org Machine Learning

Bayesian parameter inference for complex stochastic simulators is challenging due to intractable likelihood functions. Existing simulation-based inference methods often require large number of simulations and become costly to use in high-dimensional parameter spaces or in problems with partially uninformative outputs. We propose a new method for differentiable simulators that delivers accurate posterior inference with substantially reduced runtimes. Building on the Optimization Monte Carlo framework, our approach reformulates stochastic simulation as deterministic optimization problems. Gradient-based methods are then applied to efficiently navigate toward high-density posterior regions and avoid wasteful simulations in low-probability areas. A JAX-based implementation further enhances the performance through vectorization of key method components. Extensive experiments, including high-dimensional parameter spaces, uninformative outputs, multiple observations and multimodal posteriors show that our method consistently matches, and often exceeds, the accuracy of state-of-the-art approaches, while reducing the runtime by a substantial margin.


Effortless, Simulation-Efficient Bayesian Inference using Tabular Foundation Models

Vetter, Julius, Gloeckler, Manuel, Gedon, Daniel, Macke, Jakob H.

arXiv.org Artificial Intelligence

Simulation-based inference (SBI) offers a flexible and general approach to performing Bayesian inference: In SBI, a neural network is trained on synthetic data simulated from a model and used to rapidly infer posterior distributions for observed data. A key goal for SBI is to achieve accurate inference with as few simulations as possible, especially for expensive simulators. In this work, we address this challenge by repurposing recent probabilistic foundation models for tabular data: We show how tabular foundation models -- specifically TabPFN -- can be used as pre-trained autoregressive conditional density estimators for SBI. We propose Neural Posterior Estimation with Prior-data Fitted Networks (NPE-PFN) and show that it is competitive with current SBI approaches in terms of accuracy for both benchmark tasks and two complex scientific inverse problems. Crucially, it often substantially outperforms them in terms of simulation efficiency, sometimes requiring orders of magnitude fewer simulations. NPE-PFN eliminates the need for inference network selection, training, and hyperparameter tuning. We also show that it exhibits superior robustness to model misspecification and can be scaled to simulation budgets that exceed the context size limit of TabPFN. NPE-PFN provides a new direction for SBI, where training-free, general-purpose inference models offer efficient, easy-to-use, and flexible solutions for a wide range of stochastic inverse problems.


Generalized Bayesian Inference for Scientific Simulators via Amortized Cost Estimation Richard Gao

Neural Information Processing Systems

Simulation-based inference (SBI) enables amortized Bayesian inference for simulators with implicit likelihoods. But when we are primarily interested in the quality of predictive simulations, or when the model cannot exactly reproduce the observed data (i.e., is misspecified), targeting the Bayesian posterior may be


Calibrating Neural Simulation-Based Inference with Differentiable Coverage Probability

Neural Information Processing Systems

Bayesian inference allows expressing the uncertainty of posterior belief under a probabilistic model given prior information and the likelihood of the evidence. Predominantly, the likelihood function is only implicitly established by a simulator posing the need for simulation-based inference (SBI).